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1.
Dalton Trans ; 53(4): 1735-1745, 2024 Jan 23.
Artigo em Inglês | MEDLINE | ID: mdl-38168804

RESUMO

The synthesis of highly efficient NiFe-layered double hydroxides (NiFe-LDHs) to catalyze the oxygen evolution reaction (OER) is urgent and challenging. Herein, NiFe-FeCl3-x and NiFe-FeCl2-x samples (where FeCl3 and FeCl2 represent the Fe sources and x represents the imposed reaction time: 6, 12, and 24 h) were prepared via one-pot hydrothermal synthesis using Fe sources characterized by Fe(III) or Fe(II) valence states. In the presence of triethanolamine, when FeCl3 was used as the Fe source, pure NiFe-LDH was obtained, whose crystallinity increased with increasing hydrothermal treatment time. In contrast, when FeCl2 was used as the Fe source, a mixture of NiFe-LDH, Fe2O3, and trace amounts of Fe3O4 was obtained. The content of NiFe-LDH in the mixture increased under longer hydrothermal treatment and NiFe-FeCl3-x catalysts exhibited better OER performance than NiFe-FeCl2-x catalysts. Specifically, NiFe-FeCl3-6 afforded the highest OER performance with an overpotential of 246.8 mV at 10 mA cm-2 and a Tafel slope of 46.1 mV dec-1. Herein, we investigated the effects of the valence state of Fe precursors on the structures and OER activities of the prepared catalysts; the mechanism of NiFe-LDH formation via hydrothermal synthesis in the presence of triethanolamine was also proposed.

2.
Mol Cell Endocrinol ; 580: 112105, 2024 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-37952726

RESUMO

Echinoderms are a phylum of invertebrate deuterostomes, which contain echinoids, asteroids, holothuroids, crinoids, and ophiuroids. Echinoderms have special evolutionary position and unique characteristics, including pentamerous radial body structure, elaborate calcareous endoskeletons, and versatile water vascular system. Echinoderms exhibit extraordinarily diverse reproductive modes: asexual reproduction, sexual reproduction, sexual reversal, etc. Endocrine regulation plays important well-known roles in sex differentiation, gonadal development and maturation, gametogenesis, and reproductive behavior in vertebrates. However, the entire picture of reproductive endocrinology in echinoderms as an evolutionary model of the closest marine invertebrate relatives to chordates has not been revealed. Here, we reviewed previous and recent research progress on reproductive endocrinology in echinoderms, mainly including two sections: Sex steroids in echinoderms and neuropeptide regulation in echinoderm reproduction. This review introduces a variety of endocrine regulatory mechanisms in reproductive biology of echinoderms. It discusses the vertebrate-like sex steroids, putative steroidogenic pathway and metabolism, and reproduction-related neuropeptides. The review will provide a deeper understanding about endocrine regulatory mechanisms of gonadal development in lower deuterostomes and the application of endocrine control in economic echinoderm species in aquaculture.


Assuntos
Cordados , Neuropeptídeos , Animais , Equinodermos , Evolução Biológica , Esteroides , Biologia
3.
Netw Neurosci ; 7(3): 906-925, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37781140

RESUMO

Parkinson's disease is a progressive neurodegenerative disorder characterized by accumulation of abnormal isoforms of alpha-synuclein. Alpha-synuclein is proposed to act as a prion in Parkinson's disease: In its misfolded pathologic state, it favors the misfolding of normal alpha-synuclein molecules, spreads trans-neuronally, and causes neuronal damage as it accumulates. This theory remains controversial. We have previously developed a Susceptible-Infected-Removed (SIR) computational model that simulates the templating, propagation, and toxicity of alpha-synuclein molecules in the brain. In this study, we test this model with longitudinal MRI collected over 4 years from the Parkinson's Progression Markers Initiative (1,068 T1 MRI scans, 790 Parkinson's disease scans, and 278 matched control scans). We find that brain deformation progresses in subcortical and cortical regions. The SIR model recapitulates the spatiotemporal distribution of brain atrophy observed in Parkinson's disease. We show that connectome topology and geometry significantly contribute to model fit. We also show that the spatial expression of two genes implicated in alpha-synuclein synthesis and clearance, SNCA and GBA, also influences the atrophy pattern. We conclude that the progression of atrophy in Parkinson's disease is consistent with the prion-like hypothesis and that the SIR model is a promising tool to investigate multifactorial neurodegenerative diseases over time.

4.
Int J Mol Sci ; 24(18)2023 Sep 20.
Artigo em Inglês | MEDLINE | ID: mdl-37762661

RESUMO

Vasopressin/oxytocin (VP/OT)-type neuropeptide is an ancient neurophysin-associated neuropeptide and has been intensively studied to be involved in multiple physiological processes in protostomian and deuterostome vertebrates. However, little is known about the functions of VP/OT-type neuropeptide in deuterostome invertebrates especially in echinoderms. Here, we firstly report VP/OT-type neuropeptide signaling in an important economic species, Apostichopus japonicus, which is widely cultured in Asia, with high nutritional and medicinal values. Molecular characterization analysis of holotocin and its precursor revealed the highly conserved features of VP/OT family. The candidate receptor for holotocin (AjHOR) was confirmed to be able to activate the signaling via cAMP-PKA and possible Ca2+-PKC pathway, and further activated the downstream ERK1/2 cascade. Holotocin precursor expression profile showed that they were mainly concentrated in circumoral nerve ring. Furthermore, in vitro pharmacological experiments demonstrated that holotocin caused contractile responses in preparations from A. japonicus. And in vivo functional studies indicated that short-term injection of holotocin resulted in body bloat and long-term injection resulted in reduced body mass, suggesting potential roles of holotocin in osmoregulation and feeding co-inhibition with holotocin-CCK. Our findings provided a comprehensive description of AjHOR-holotocin signaling, revealed ancient roles of holotocin in osmoregulation and feeding inhibition by controlling muscle contractions.

5.
RSC Adv ; 13(28): 19585-19594, 2023 Jun 22.
Artigo em Inglês | MEDLINE | ID: mdl-37388144

RESUMO

NiO-based composites exhibit high catalytic activity for the oxygen evolution reaction (OER). Herein, high-performance NiO/Ni/C nanosheet catalysts were obtained by liquid-phase pulsed plasma (LPP), which was generated between two nickel electrodes in ethylene glycol (EG) solution by a homemade high-voltage pulse power supply. Melted nickel nanodrops were ejected from nickel electrodes which were bombarded by the energetic plasma. Simultaneously, high-temperature nickel nanodrops promoted the decomposition of the organics which were converted in the EG solution by the catalysis of LPP and formed hierarchical porous carbon nanosheets. Due to the high surface energy of the hierarchical porous carbon nanosheets, the spherical particles of Ni/NiO were adsorbed on the surface to compose the NiO/Ni/C composites. The pore size distribution of the composites could be controlled with different EG concentrations. When the EG concentration was 10 vol% (EG30), the composites possessed a H2 + H2 + H3 type pore size distribution and maximum active site area, leading to an exceptional OER activity (289.2 mV overpotential at 10 mA cm-2).

6.
J Colloid Interface Sci ; 629(Pt B): 610-619, 2023 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-36179580

RESUMO

Water electrolysis is a promising technique for producing high-quality hydrogen, the application of which is impeded by the sluggish oxygen evolution reaction (OER) process. In this study, ultrathin nickel-iron layered double hydroxide (NiFe LDH) nanosheets were successfully synthesized through a facile hydrothermal reaction with the assistance of triethanolamine (TEA). Morphological and structural characterizations revealed that the presence of TEA modified the morphology of NiFe LDH, facilitated the synthesis of high-purity NiFe LDH, improved the crystallinity of NiFe LDH and resulted in a slight decrease in specific surface area. X-ray photoelectron spectroscopy (XPS) analysis demonstrated the modulation of the electronic structure engendered by the addition of TEA, with nickel and iron appearing in high valence state in the resulting NiFe LDH nanosheets. The as-prepared NiFe LDH nanosheets possessed outstanding OER activity with fast kinetics, exhibiting a low overpotential of 261 mV to achieve a current density of 10 mA cm-2 and a small Tafel slope of 32.5 mV dec-1 in 1 M KOH. The excellent OER performance and rapid OER kinetics are mainly attributed to the high-valence Ni and Fe rather than the modification in the morphology and microstructure.

7.
IEEE Trans Med Imaging ; 42(3): 834-849, 2023 03.
Artigo em Inglês | MEDLINE | ID: mdl-36318559

RESUMO

Data-driven discovery of image-derived phenotypes (IDPs) from large-scale multimodal brain imaging data has enormous potential for neuroscientific and clinical research by linking IDPs to subjects' demographic, behavioural, clinical and cognitive measures (i.e., non-imaging derived phenotypes or nIDPs). However, current approaches are primarily based on unsupervised approaches, without the use of information in nIDPs. In this paper, we proposed a semi-supervised, multimodal, and multi-task fusion approach, termed SuperBigFLICA, for IDP discovery, which simultaneously integrates information from multiple imaging modalities as well as multiple nIDPs. SuperBigFLICA is computationally efficient and largely avoids the need for parameter tuning. Using the UK Biobank brain imaging dataset with around 40,000 subjects and 47 modalities, along with more than 17,000 nIDPs, we showed that SuperBigFLICA enhances the prediction power of nIDPs, benchmarked against IDPs derived by conventional expert-knowledge and unsupervised-learning approaches (with average nIDP prediction accuracy improvements of up to 46%). It also enables the learning of generic imaging features that can predict new nIDPs. Further empirical analysis of the SuperBigFLICA algorithm demonstrates its robustness in different prediction tasks and the ability to derive biologically meaningful IDPs in predicting health outcomes and cognitive nIDPs, such as fluid intelligence and hypertension.


Assuntos
Algoritmos , Encéfalo , Encéfalo/diagnóstico por imagem , Neuroimagem/métodos , Fenótipo
8.
Biology (Basel) ; 11(10)2022 Oct 20.
Artigo em Inglês | MEDLINE | ID: mdl-36290441

RESUMO

Here, we described the complex nervous system at five early developmental stages (blastula, gastrula, auricularia, doliolaria and pentactula) of a holothurian species with highly economic value, Apostichopus japonicus. The results revealed that the nervous system of embryos and larvae is mainly distributed in the anterior apical region, ciliary bands or rings, and the feeding and attachment organs, and that serotonergic immunoreactivity was not observed until the embryo developed into the late gastrula; these are evolutionarily conserved features of echinoderm, hemichordate and protostome larvae. Furthermore, based on available transcriptome data, we reported the neuropeptide precursors profile at different embryonic and larval developmental stages. This analysis showed that 40 neuropeptide precursors present in adult sea cucumbers were also identified at different developmental stages of embryos and larvae, and only four neuropeptide precursors (SWYG precursor 2, GYWKDLDNYVKAHKT precursor, Neuropeptide precursor 14-like precursor, GLRFAmprecursor-like precursor) predicted in adults were absent in embryos and larvae. Combining the quantitative expression of ten specific neuropeptide precursor genes (NPs) by qRT-PCR, we revealed the potential important roles of neuropeptides in embryo development, feeding and attachment in A. japonicus larvae. In conclusion, this work provides novel perspectives on the diverse physiological functions of neuropeptides and contributes to understanding the evolution of neuropeptidergic systems in echinoderm embryos and larvae.

9.
Peptides ; 155: 170839, 2022 09.
Artigo em Inglês | MEDLINE | ID: mdl-35839946

RESUMO

The functional characteristics of neuropeptides in marine invertebrates have attracted significant attention recently although functional studies of luqin-type neuropeptides are still very limited, especially in deuterostomes. The sea cucumber, Apostichopus japonicus, is a representative species of deuterostomian Holothurian invertebrates. The species has high nutritional and medicinal value in China. In this study, we report the first comprehensive histological, biochemical and pharmacological characterization of luqin-type neuropeptide signaling in the sea cucumber A. japonicus. The A. japonicus luqin-like neuropeptide precursor (AjLQP) contains a single typical deuterostomian luqin-like neuropeptide AjLQ with an xFxRWamide motif. AjLQ was identified as the ligand for a luqin-type neuropeptide receptor AjLQR, that was previously predicted to be a tachykinin-type receptor, and triggers a rapid intracellular mobilization of Ca2+, followed by receptor internalization and a transient increase in ERK1/2 phosphorylation. In situ hybridization, immunohistochemistry and qRT-PCR analysis revealed extensive expression of AjLQP and AjLQ in A. japonicus tissues, especially in locomotion-related organs. In vitro pharmacological tests revealed that AjLQ caused 12.69% ± 1.99% (p < 0.01) relaxation of longitudinal muscle preparations at 10-7 M concentration. Furthermore, we observed significantly increased expression of AjLQP (about 17.63 fold, p < 0.01) in intestine of deeply aestivating sea cucumbers, which suggests that AjLQ might be involved in feeding inhibition during aestivation. The present study provides a first insight into the experimental characterization of luqin-type neuropeptide signaling in a sea cucumber. The results will broaden our understanding of the potential function of neuropeptides during important biological processes in marine invertebrates and provide theoretical support for optimizing sea cucumber aquaculture technology.


Assuntos
Neuropeptídeos , Pepinos-do-Mar , Stichopus , Animais , China , Neuropeptídeos/genética , Neuropeptídeos/metabolismo , Receptores de Neuropeptídeos/metabolismo , Pepinos-do-Mar/genética , Pepinos-do-Mar/metabolismo , Stichopus/genética , Stichopus/metabolismo
10.
Neuroimage ; 259: 119418, 2022 10 01.
Artigo em Inglês | MEDLINE | ID: mdl-35777635

RESUMO

Modelling and predicting individual differences in task-fMRI activity can have a wide range of applications from basic to clinical neuroscience. It has been shown that models based on resting-state activity can have high predictive accuracy. Here we propose several improvements to such models. Using a sparse ensemble learner, we show that (i) features extracted using Stochastic Probabilistic Functional Modes (sPROFUMO) outperform the previously proposed dual-regression approach, (ii) that the shape and overall intensity of individualised task activations can be modelled separately and explicitly, (iii) training the model on predicting residual differences in brain activity further boosts individualised predictions. These results hold for both surface-based analyses of the Human Connectome Project data as well as volumetric analyses of UK-biobank data. Overall, our model achieves state of the art prediction accuracy on par with the test-retest reliability of task-fMRI scans, suggesting that it has potential to supplement traditional task localisers.


Assuntos
Conectoma , Imageamento por Ressonância Magnética , Encéfalo/diagnóstico por imagem , Encéfalo/fisiologia , Conectoma/métodos , Humanos , Individualidade , Imageamento por Ressonância Magnética/métodos , Reprodutibilidade dos Testes
11.
Neuroimage ; 260: 119452, 2022 10 15.
Artigo em Inglês | MEDLINE | ID: mdl-35803473

RESUMO

Biophysical models that attempt to infer real-world quantities from data usually have many free parameters. This over-parameterisation can result in degeneracies in model inversion and render parameter estimation ill-posed. However, in many applications, we are not interested in quantifying the parameters per se, but rather in identifying changes in parameters between experimental conditions (e.g. patients vs controls). Here we present a Bayesian framework to make inference on changes in the parameters of biophysical models even when model inversion is degenerate, which we refer to as Bayesian EstimatioN of CHange (BENCH). We infer the parameter changes in two steps; First, we train models that can estimate the pattern of change in the measurements given any hypothetical direction of change in the parameters using simulations. Next, for any pair of real data sets, we use these pre-trained models to estimate the probability that an observed difference in the data can be explained by each model of change. BENCH is applicable to any type of data and models and particularly useful for biophysical models with parameter degeneracies, where we can assume the change is sparse. In this paper, we apply the approach in the context of microstructural modelling of diffusion MRI data, where the models are usually over-parameterised and not invertible without injecting strong assumptions. Using simulations, we show that in the context of the standard model of white matter our approach is able to identify changes in microstructural parameters from conventional multi-shell diffusion MRI data. We also apply our approach to a subset of subjects from the UK-Biobank Imaging to identify the dominant standard model parameter change in areas of white matter hyperintensities under the assumption that the standard model holds in white matter hyperintensities.


Assuntos
Imagem de Difusão por Ressonância Magnética , Substância Branca , Teorema de Bayes , Imagem de Difusão por Ressonância Magnética/métodos , Humanos , Imageamento por Ressonância Magnética , Substância Branca/diagnóstico por imagem
12.
RSC Adv ; 12(17): 10496-10503, 2022 Mar 31.
Artigo em Inglês | MEDLINE | ID: mdl-35424973

RESUMO

NiO combined with conductive materials is a practicable way to improve its catalytic property for the oxygen evolution reaction (OER) by enhancing its electrical conductivity. Herein, Ni@NiO@graphite nanoparticles less than 20 nm in average diameter were synthesized by a one-step chemical vapor deposition process. Due to the deliberately controlled lack of oxygen, Ni particles and carbon clusters decomposed from NiCp2 precursors were oxidized incompletely and formed Ni@NiO core-shell nanoparticles coated by a graphite layer. The thickness of the graphite layer and the content of Ni were controlled by varying deposition temperature. The electrochemical activity towards the oxygen evolution reaction was assessed within alkaline media. Compared with commercial NiO powder, the Ni@NiO@graphite nanoparticles with the unique core-shell microstructure exhibit excellent OER performance, i.e., an overpotential of 330 mV (vs. RHE) at 10 mA cm-2 and a Tafel slope of 49 mV dec-1, due to the improved electrical conductivity and more active sites. This work provides a facile and rapid strategy to produce nanoparticles with unique microstructures as highly active electrocatalysts for the OER.

13.
Brain ; 145(5): 1743-1756, 2022 06 03.
Artigo em Inglês | MEDLINE | ID: mdl-34910119

RESUMO

Parkinson's disease is a progressive neurodegenerative disorder characterized by the intracellular accumulation of insoluble alpha-synuclein aggregates into Lewy bodies and neurites. Increasing evidence indicates that Parkinson's disease progression results from the spread of pathologic alpha-synuclein through neuronal networks. However, the exact mechanisms underlying the propagation of abnormal proteins in the brain are only partially understood. The objective of this study was first to describe the long-term spatiotemporal distributions of Lewy-related pathology in mice injected with alpha-synuclein preformed fibrils and then to recreate these patterns using a computational model that simulates in silico the spread of pathologic alpha-synuclein. In this study, 87 2-3-month-old non-transgenic mice were injected with alpha-synuclein preformed fibrils to generate a comprehensive post-mortem dataset representing the long-term spatiotemporal distributions of hyperphosphorylated alpha-synuclein, an established marker of Lewy pathology, across the 426 regions of the Allen Mouse Brain Atlas. The mice were injected into either the caudoputamen, nucleus accumbens or hippocampus, and followed over 24 months with pathologic alpha-synuclein quantified at seven intermediate time points. The pathologic patterns observed at each time point in this high-resolution dataset were then compared to those generated using a Susceptible-Infected-Removed (SIR) computational model, an agent-based model that simulates the spread of pathologic alpha-synuclein for every brain region taking simultaneously into account the effect of regional brain connectivity and Snca gene expression. Our histopathological findings showed that differentially targeted seeding of pathological alpha-synuclein resulted in unique propagation patterns over 24 months and that most brain regions were permissive to pathology. We found that the SIR model recreated the observed distributions of pathology over 24 months for each injection site. Null models showed that both Snca gene expression and connectivity had a significant influence on model fit. In sum, our study demonstrates that the combination of normal alpha-synuclein concentration and brain connectomics contributes to making brain regions more vulnerable to the pathological process, providing support for a prion-like spread of pathologic alpha-synuclein. We propose that this rich dataset and the related computational model will help test new hypotheses regarding mechanisms that may alter the spread of pathologic alpha-synuclein in the brain.


Assuntos
Doença de Parkinson , alfa-Sinucleína , Animais , Encéfalo/patologia , Humanos , Corpos de Lewy/patologia , Camundongos , Neurônios/metabolismo , Doença de Parkinson/metabolismo , alfa-Sinucleína/metabolismo
14.
Mar Environ Res ; 169: 105326, 2021 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-33848850

RESUMO

Oxygen deficit and sulfide have been restrictive factors in mariculture zones. However, the adaptive mechanism in aquatic lives is still unclear. The commercial ark shells Anadara broughtonii were selected to test the tolerance and adaptive responses to prolonged and intermittent hypoxia with or without exogenous sulfide (mild, moderate, high) by evaluating their behavior, mortality, oxidative level, antioxidant responses, and the MAPK-mediated apoptosis in gills. The results indicated that the clams were tolerant to hypoxia and sulfide exposure but vulnerable during reoxygenation from the challenges. Even so, sulfide had remarkable effect on attenuating the accumulation of reactive oxygen species (ROS) and lipid peroxides caused by reoxygenation from prolonged hypoxia. The increase of glutathione level was probably as an early and primary protective response to prevent the expected reperfusion injury from reoxygenation. The challenges suppressed the oxidative level with a dose-dependent effect of sulfide, with an exception when exposed to mild sulfide. Synchronously, biphasic effects of exogenous sulfide on apoptotic cascade, which was induced by mild sulfide while it was inhibited by higher sulfide, were also detected in gills. The induced or inhibited apoptosis by hypoxia and sulfide kept to a typical ROS-MAPK-CASPASE cascade, desiderating further investigation.


Assuntos
Arcidae , Scapharca , Animais , Apoptose , Hipóxia Celular , Hipóxia , Estresse Oxidativo , Oxigênio , Espécies Reativas de Oxigênio , Sulfetos/toxicidade
15.
J Hazard Mater ; 403: 123559, 2021 02 05.
Artigo em Inglês | MEDLINE | ID: mdl-32798792

RESUMO

Excessive synthetic dyestuffs in the aquatic environment pose various ecological and health issues that are detrimental to sustainable development. Adsorption is considered a feasible technique of eliminating dye pollutants from the water environment because of its advantages of high efficiency, low cost, easy operation, and absence of secondary pollution. Among the many dyes, Congo red (CR) is a widely used azo dye. Nickel-based materials, including nickel hydroxide, nickel oxide, nickel-containing layered double hydroxides, nickel-based spinel and metal-organic frameworks, metallic nickel, nickel-based sulfide, and nickel composites, have been extensively studied for CR adsorption due to their morphological diversity, large specific surface area, and strong affinity toward CR. However, fabricating nickel-based adsorbents with high efficiency and stability and excellent recyclability for practical application remains a challenge. This review outlines the research progress of nickel-based materials in CR adsorption. The interaction between CR molecules and nickel-based adsorbents is systematically presented, and the possible adsorption mechanisms are summarized. Finally, the challenges and future development directions of the practical application of nickel-based adsorbent materials are proposed.

16.
Genes (Basel) ; 11(9)2020 08 31.
Artigo em Inglês | MEDLINE | ID: mdl-32877994

RESUMO

Organisms respond to severe environmental changes by entering into hypometabolic states, minimizing their metabolic rates, suspending development and reproduction, and surviving critical ecological changes. They come back to an active lifestyle once the environmental conditions are conducive. Marine invertebrates live in the aquatic environment and adapt to environmental changes in their whole life. Sea cucumbers and sponges are only two recently known types of marine organisms that aestivate in response to temperature change. Sea cucumber has become an excellent model organism for studies of environmentally-induced aestivation by marine invertebrates. DNA methylation, the most widely considered epigenetic marks, has been reported to contribute to phenotypic plasticity in response to environmental stress in aquatic organisms. Most of methylation-related enzymes, including DNA methyltransferases, Methyl-CpG binding domain proteins, and DNA demethylases, were up-regulated during aestivation. We conducted high-resolution whole-genome bisulfite sequencing of the intestine from sea cucumber at non-aestivation and deep-aestivation stages. Further DNA methylation profile analysis was also conducted across the distinct genomic features and entire transcriptional units. A different elevation in methylation level at internal exons was observed with clear demarcation of intron/exon boundaries during transcriptional unit scanning. The lowest methylation level occurs in the first exons, followed by the last exons and the internal exons. A significant increase in non-CpG methylation (CHG and CHH) was observed within the intron and mRNA regions in aestivation groups. A total of 1393 genes were annotated within hypermethylated DMRs (differentially methylated regions), and 749 genes were annotated within hypomethylated DMRs. Differentially methylated genes were enriched in the mRNA surveillance pathway, metabolic pathway, and RNA transport. Then, 24 hypermethylated genes and 15 hypomethylated genes were Retrovirus-related Pol polyprotein from transposon (RPPT) genes. This study provides further understanding of epigenetic control on environmental induced hypometabolism in aquatic organisms.


Assuntos
Metilação de DNA , Meio Ambiente , Estivação , Regulação da Expressão Gênica , Genoma , Hibernação , Pepinos-do-Mar/genética , Animais , Epigênese Genética , Perfilação da Expressão Gênica , Pepinos-do-Mar/crescimento & desenvolvimento
17.
Netw Neurosci ; 4(4): 1181-1196, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-33409435

RESUMO

The brain is a complex network of interconnected and interacting neuronal populations. Global efforts to understand the emergence of behavior and the effect of perturbations depend on accurate reconstruction of white matter pathways, both in humans and in model organisms. An emerging animal model for next-generation applied neuroscience is the common marmoset (Callithrix jacchus). A recent open respository of retrograde and anterograde tract tracing presents an opportunity to systematically study the network architecture of the marmoset brain (Marmoset Brain Architecture Project; http://www.marmosetbrain.org). Here we comprehensively chart the topological organization of the mesoscale marmoset cortico-cortical connectome. The network possesses multiple nonrandom attributes that promote a balance between segregation and integration, including near-minimal path length, multiscale community structure, a connective core, a unique motif composition, and multiple cavities. Altogether, these structural attributes suggest a link between network architecture and function. Our findings are consistent with previous reports across a range of species, scales, and reconstruction technologies, suggesting a small set of organizational principles universal across phylogeny. Collectively, these results provide a foundation for future anatomical, functional, and behavioral studies in this model organism.

18.
PLoS Biol ; 17(11): e3000495, 2019 11.
Artigo em Inglês | MEDLINE | ID: mdl-31751329

RESUMO

It is becoming increasingly clear that brain network organization shapes the course and expression of neurodegenerative diseases. Parkinson disease (PD) is marked by progressive spread of atrophy from the midbrain to subcortical structures and, eventually, to the cerebral cortex. Recent discoveries suggest that the neurodegenerative process involves the misfolding and prion-like propagation of endogenous α-synuclein via axonal projections. However, the mechanisms that translate local "synucleinopathy" to large-scale network dysfunction and atrophy remain unknown. Here, we use an agent-based epidemic spreading model to integrate structural connectivity, functional connectivity, and gene expression and to predict sequential volume loss due to neurodegeneration. The dynamic model replicates the spatial and temporal patterning of empirical atrophy in PD and implicates the substantia nigra as the disease epicenter. We reveal a significant role for both connectome topology and geometry in shaping the distribution of atrophy. The model also demonstrates that SNCA and GBA transcription influence α-synuclein concentration and local regional vulnerability. Functional coactivation further amplifies the course set by connectome architecture and gene expression. Altogether, these results support the theory that the progression of PD is a multifactorial process that depends on both cell-to-cell spreading of misfolded proteins and regional vulnerability.


Assuntos
Rede Nervosa/fisiologia , Doenças Neurodegenerativas/etiologia , Doenças Neurodegenerativas/metabolismo , Atrofia , Encéfalo/metabolismo , Conectoma/métodos , Bases de Dados Factuais , Imagem de Difusão por Ressonância Magnética/métodos , Humanos , Modelos Teóricos , Doença de Parkinson/metabolismo , Transcriptoma/genética , alfa-Sinucleína/genética
19.
Sci Rep ; 9(1): 8829, 2019 06 20.
Artigo em Inglês | MEDLINE | ID: mdl-31222106

RESUMO

The sea cucumber Apostichopus japonicus is a foodstuff with very high economic value in China, Japan and other countries in south-east Asia. It is at the heart of a multibillion-dollar industry and to meet demand for this product, aquaculture methods and facilities have been established. However, there are challenges associated with optimization of reproduction, feeding and growth in non-natural environments. Therefore, we need to learn more about the biology of A. japonicus, including processes such as aestivation, evisceration, regeneration and albinism. One of the major classes of molecules that regulate physiology and behaviour in animals are neuropeptides, and a few bioactive peptides have already been identified in A. japonicus. To facilitate more comprehensive investigations of neuropeptide function in A. japonicus, here we have analysed genomic and transcriptomic sequence data and proteomic data to identify neuropeptide precursors and neuropeptides in this species. We identified 44 transcripts encoding neuropeptide precursors or putative neuropeptide precursors, and in some instances neuropeptides derived from these precursors were confirmed by mass spectrometry. Furthermore, analysis of genomic sequence data enabled identification of the location of neuropeptide precursor genes on genomic scaffolds and linkage groups (chromosomes) and determination of gene structure. Many of the precursors identified contain homologs of neuropeptides that have been identified in other bilaterian animals. Precursors of neuropeptides that have thus far only been identified in echinoderms were identified, including L- and F-type SALMFamides, AN peptides and others. Precursors of several peptides that act as modulators of neuromuscular activity in A. japonicus were also identified. The discovery of a large repertoire of neuropeptide precursors and neuropeptides provides a basis for experimental studies that investigate the physiological roles of neuropeptide signaling systems in A. japonicus. Looking ahead, some of these neuropeptides may have effects that could be harnessed to enable improvements in the aquaculture of this economically important species.


Assuntos
Neuropeptídeos/genética , Neuropeptídeos/metabolismo , Precursores de Proteínas , Pepinos-do-Mar/genética , Pepinos-do-Mar/metabolismo , Sequência de Aminoácidos , Animais , Biologia Computacional/métodos , Perfilação da Expressão Gênica , Espectrometria de Massas , Neuropeptídeos/química , Proteoma , Proteômica , Transcriptoma
20.
J Hazard Mater ; 369: 214-225, 2019 May 05.
Artigo em Inglês | MEDLINE | ID: mdl-30776604

RESUMO

Three-dimensional (3D) hierarchical graphene oxide-NiFe layered double hydroxide (GO-NiFe LDH) composite with sandwich-like structure is fabricated using a facile one-pot hydrothermal reaction. Electron microscopy images demonstrate that the GO-NiFe LDH composite possesses a highly porous and well-ordered structure. Both sides of the GO are fully covered by the LDH nanosheets, resulting in the sandwich-like architecture. The adsorption performance of the GO-NiFe LDH composite and pure NiFe LDH for three anionic pollutants, namely, Congo red (CR), methyl orange (MO) and hexavalent chromium ion [Cr(VI)] is systematically investigated. The presence of GO in the GO-NiFe LDH composite leads to the better adsorption capability and faster adsorption kinetics of this composite compared with the NiFe LDH microspheres. The pseudo-second-order kinetic model can well represent the adsorption kinetics, and the Langmuir isotherm model provides a better description for the adsorption isotherms. The GO-NiFe LDH composite demonstrates appreciable potential in alleviating anionic pollutants from the aquatic environment as shown by its excellent adsorption capability towards CR, MO and Cr(VI).

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